Genome flux and stasis in a five millennium transect of European prehistory

[FenriR]

почему-то пропустил результаты IR1 по MDLP23b:

Код: [Выделить]

Population
Amerindian -   
[b]Ancestral_Altaic 11.70%
South_Central_Asian 7.64%
Arctic 2.23%[/b]
South_Indian -   
Australoid -   
Austronesian -   
[b]Caucasian 21.69%[/b]
Archaic_Human -   
East_African -   
East_Siberian 0.36%
[b]European_Early_Farmers 27.45%[/b]
Khoisan -   
Melano_Polynesian -   
Archaic_African -   
Near_East -   
North_African -   
[b]Paleo_Siberian 1.75%[/b]
African_Pygmy 0.81%
South_East_Asian -   
Subsaharian -   
Tungus-Altaic -   
[b]European_Hunters_Gatherers 26.37%[/b]

1 Basque_Spanish + Chechen + Norwegian_West + Udmurd @ 5.160100
2 Adygei + Basque_French + Norwegian_West + Udmurd @ 5.184566
3 Basque_French + Chechen + Norwegian_West + Udmurd @ 5.192426
4 Adygei + Basque_Spanish + Norwegian_West + Udmurd @ 5.195741
5 Basque_Spanish + Kumyk + Norwegian_West + Udmurd @ 5.253640
6 Basque_French + Kumyk + Norwegian_West + Udmurd @ 5.296266
7 Basque_French + Kumyk + Swede + Udmurd @ 5.345784
8 Balkar + Basque_French + Norwegian_West + Udmurd @ 5.351166
9 Basque_French + Chechen + Swede + Udmurd @ 5.353514
10 Balkar + Basque_Spanish + Norwegian_West + Udmurd @ 5.388032
11 Adygei + Basque_French + Swede + Udmurd @ 5.393047
12 Basque_Spanish + Kumyk + Swede + Udmurd @ 5.414503
13 Basque_French + North_Ossetian + Norwegian_West + Udmurd @ 5.416437
14 Basque_Spanish + Stalskoe_Kumyk + Swede + Udmurd @ 5.420098
15 Basque_Spanish + Chechen + Swede + Udmurd @ 5.430088
16 Basque_Spanish + North_Ossetian + Norwegian_West + Udmurd @ 5.440136
17 Basque_French + Chechen + Norwegian_East + Udmurd @ 5.443394
18 Adygei + Basque_Spanish + Icelandic + Udmurd @ 5.447413
19 Adygei + Basque_French + Icelandic + Udmurd @ 5.452480
20 Basque_Spanish + Chechen + Norwegian_East + Udmurd @ 5.465786
Практически равные значения для западно-сибирской (бОльшая  часть ANE?), кавказской, европейской (WHG) и, условно, "неолитической" компоненты=)

[Srkz]

KO1 по IBD. Настройки аналогичны применявшимся для IR1 (но по сравнению с современными геномами фильтрация резко ослаблена)

Код: [Выделить]

Balt 34,53 ---//Confidence: high
Polish 34,16 ---//Confidence: high
Estonian 33,38 ---//Confidence: high
Russian-South 33,19 ---//Confidence: very high
Karelian 33,09 ---//Confidence: high
Belarusian 32,59 ---//Confidence: high
German-Austrian 30,72 ---//Confidence: very low
Norwegian 30,66 ---//Confidence: high
Russian-North 29,65 ---//Confidence: very high
Ukrainian-West-and-Center 29,25 ---//Confidence: medium
Russian-West 28,73 ---//Confidence: medium
Hungarian 28,72 ---//Confidence: very high
Swedish 28,43 ---//Confidence: high
Komi 28,12 ---//Confidence: high
Erzya 27,65 ---//Confidence: medium
Ukrainian-East-and-Center 27,46 ---//Confidence: medium
British 27,17 ---//Confidence: very high
Moksha 26,9 ---//Confidence: very low
Saami 26,64 ---//Confidence: high
Mari 26,14 ---//Confidence: high
Veps 25,99 ---//Confidence: medium
Italian 25,06 ---//Confidence: very high
Finnish 25,02 ---//Confidence: very low
Croatian 24,96 ---//Confidence: very high
Tatar-Kazan 24,24 ---//Confidence: high
Greek 23,99 ---//Confidence: very high
Basque 23,74 ---//Confidence: very high
French 23,71 ---//Confidence: very high
Tatar_Lithuanian 23,68 ---//Confidence: very low
Bashkir 23,66 ---//Confidence: low
Udmurt 23,25 ---//Confidence: high
Chuvash 21,22 ---//Confidence: high
Ashkenazi 20,17 ---//Confidence: high
Sardinian 19,78 ---//Confidence: very high
Adygei 19,76 ---//Confidence: high
Greek_Azov 18,84 ---//Confidence: low
Mansi 18,44 ---//Confidence: medium
Bulgarian 18,26 ---//Confidence: high
Romanian 18,04 ---//Confidence: medium
Kumyk 17,97 ---//Confidence: high
Uygur 17,33 ---//Confidence: medium
Chechen 17,05 ---//Confidence: very high
Turkish 16,71 ---//Confidence: high
Sephard 16,62 ---//Confidence: high
Balkarian 16,5 ---//Confidence: very high
Tatar-Crimean 16,19 ---//Confidence: low
Uzbek 15,86 ---//Confidence: high
Abkhazian 15,84 ---//Confidence: very high
Tadjik 15,52 ---//Confidence: high
Kirgiz 15,18 ---//Confidence: very high
Armenian 14,84 ---//Confidence: high
Ossetian 14,77 ---//Confidence: high
Turkmen 14,71 ---//Confidence: high
Nogay 14,52 ---//Confidence: high
Georgian 14,13 ---//Confidence: high
Azerbaijani 13,81 ---//Confidence: high
Ket 13,79 ---//Confidence: very low
Kazah 13,24 ---//Confidence: high
Lezgin 13,15 ---//Confidence: very high
Dolgan 12,69 ---//Confidence: medium
Selkup 12,44 ---//Confidence: high
Iranian 12,41 ---//Confidence: very high
Hakas 12,05 ---//Confidence: medium
Altaian 11,49 ---//Confidence: high
Shor 9,85 ---//Confidence: very low
Mongol 8,9 ---//Confidence: medium
Yakut 8,06 ---//Confidence: very high
Tuvinian 7,6 ---//Confidence: high
Han-North 7,03 ---//Confidence: medium
Nganassan 6,76 ---//Confidence: medium
Evenk 6,22 ---//Confidence: high
Buryat 5,93 ---//Confidence: high
Even 5,73 ---//Confidence: medium

[Srkz]

почему-то пропустил результаты IR1 по MDLP23b:
Ancestral_Altaic   11.70%
South_Central_Asian   7.64%
Arctic   2.23%

Здесь удобно, что ANE разбит на несколько компонентов. Классический ANE, выведенный из результатов мальтинца и афонтовца, это Ancestral_Altaic. У IR1 он на уровне чуть ниже, чем у чувашей и башкир (но у марийцев, коми и селькупов уровень еще выше)

[Murzalar]

почему-то пропустил результаты IR1 по MDLP23b:
Ancestral_Altaic   11.70%
South_Central_Asian   7.64%
Arctic   2.23%

Здесь удобно, что ANE разбит на несколько компонентов. Классический ANE, выведенный из результатов мальтинца и афонтовца, это Ancestral_Altaic. У IR1 он на уровне чуть ниже, чем у чувашей и башкир (но у марийцев, коми и селькупов уровень еще выше)

Я что то пропустил. А есть усередненные данные по башкирам?

[Srkz]

Я что то пропустил. А есть усередненные данные по башкирам?

Я со времени нашей переписки летом так и не продвинулся, сначала заработался, а потом как-то забылось. Поэтому усреднение только по двум башкирам
K23b:
Amerindian   1,44
Ancestral_Altaic   13,06
South_Central_Asian   6,98
Arctic   2,54
South_Indian   0,62
Australoid   0,14
Austronesian   0,61
Caucasian   16,33
Archaic_Human   0,22
East_African   0,08
East_Siberian   13,33
European_Early_Farmers   2,86
Khoisan   0,06
Melano_Polynesian   0,02
Archaic_African   0,03
Near_East   1,22
North_African   0,27
Paleo_Siberian   0,86
African_Pygmy   0,02
South_East_Asian   1,85
Subsaharian   0,03
Tungus-Altaic   10,41
European_Hunters_Gatherers   27,02

[Murzalar]

Я что то пропустил. А есть усередненные данные по башкирам?

Я со времени нашей переписки летом так и не продвинулся, сначала заработался, а потом как-то забылось. Поэтому усреднение только по двум башкирам
K23b:
Amerindian   1,44
Ancestral_Altaic   13,06
South_Central_Asian   6,98
Arctic   2,54
South_Indian   0,62
Australoid   0,14
Austronesian   0,61
Caucasian   16,33
Archaic_Human   0,22
East_African   0,08
East_Siberian   13,33
European_Early_Farmers   2,86
Khoisan   0,06
Melano_Polynesian   0,02
Archaic_African   0,03
Near_East   1,22
North_African   0,27
Paleo_Siberian   0,86
African_Pygmy   0,02
South_East_Asian   1,85
Subsaharian   0,03
Tungus-Altaic   10,41
European_Hunters_Gatherers   27,02

Странно я думал больше было. Сюда бы конечно Каримовских Кудейцев для сравнения. Имхо знаю что по факту есть и что они нашим родня,а посмотреть не могу. А аю мурзалар вы тоже смотрели?

[Srkz]

Странно я думал больше было. Сюда бы конечно Каримовских Кудейцев для сравнения. Имхо знаю что по факту есть и что они нашим родня,а посмотреть не могу. А аю мурзалар вы тоже смотрели?

Он же по аутосомам только частично башкир, его нельзя сюда добавить. А по IBD все его родственные выборки проявились.

[Murzalar]

Странно я думал больше было. Сюда бы конечно Каримовских Кудейцев для сравнения. Имхо знаю что по факту есть и что они нашим родня,а посмотреть не могу. А аю мурзалар вы тоже смотрели?

Он же по аутосомам только частично башкир, его нельзя сюда добавить. А по IBD все его родственные выборки проявились.

Наверное придется протестптся. А скидки есть типо купонов на это?

[Srkz]

Наверное придется протестптся. А скидки есть типо купонов на это?

Раньше были, а сейчас, кажется, нет

[FenriR]

Я что то пропустил. А есть усередненные данные по башкирам?

Я со времени нашей переписки летом так и не продвинулся, сначала заработался, а потом как-то забылось. Поэтому усреднение только по двум башкирам

А по уйгурам есть что-нибудь?

[Srkz]

А по уйгурам есть что-нибудь?

Только казахи

[Srkz]

Чандракумар закончил обработку одного из двух геномов из этой работы, прочитанных с высоким качеством - BR2. Качество действительно принципиально отличается от  предыдущих геномов в этой теме, охват снипами из наборов FTDNA и 23andMe очень высок. Процент гетерозиготных аллелей близок к тому, что получается у наших современников (прочтения геномов с низким охватом выходили почти полностью гомозиготными).
В отличие от Eurogenes K13 и K15, разница между BR1 и BR2 в калькуляторе MDLP K27 получилась более значительной (в том числе у BR2 довольно заметное количество "кавказских" компонентов. Возможно, в версии Eurogenes Кавказ и Ближний Восток разделены более резко). Возможно, конечно, разница объясняется расхождением образцов по времени, но думаю, тут все же большую роль сыграло качество прочтения.
BR2 по ANE K7:
0.979739 genotype rate
 11.81%  ANE                 
  1.63%  ASE                 
 63.64%  WHG-UHG             
  0.01%  East_Eurasian       
  0.40%  West_African       
  0.95%  East_African       
 21.57%  ENF

BR2 по MDLP K27:
  0.00%  Nilotic-Omotic     
  0.00%  Ancestral-South-Indi
 35.72%  North-European-Balti
  0.15%  Uralic             
  0.30%  Australo-Melanesian
  0.00%  East-Siberean       
  0.00%  Ancestral-Yayoi     
 16.45%  Caucasian-Near-Easte
  0.00%  Tibeto-Burman       
  0.00%  Austronesian       
  0.42%  Central-African-Pygm
  0.27%  Central-African-Hunt
  0.00%  Nilo-Saharian       
  0.01%  North-African       
  4.19%  Gedrosia-Caucasian 
  1.60%  Cushitic           
  0.00%  Congo-Pygmean       
  0.04%  Bushmen             
  0.00%  South-Meso-Amerindia
 30.36%  South-West-European
  0.72%  North-Amerindian   
  2.85%  Arabic             
  0.00%  North-Circumpolar   
  1.03%  Kalash             
  0.08%  Papuan-Australian   
  5.81%  Baltic-Finnic       
  0.00%  Bantu

Оракул смотрится довольно близко к современной Венгрии, особенно усреднения в комбинациях:

Код: [Выделить]

1 German_R3 @ 10,354785
2 English_R2 @ 11,52271
3 Croatian_S11 @ 11,588344
4 French_R1 @ 11,696106
5 Carpathian_R1 @ 12,958335
6 Slovak_D @ 13,20714
7 Moldavian_S3 @ 13,698864
8 Norwegian_R4 @ 14,760435
9 Serbian_R1 @ 14,8003
10 Irish_Scottish_R2 @ 15,428366
11 Bulgarian_S14 @ 15,698037
12 Ukrainian_West_R2 @ 18,551929
13 Romanian_D @ 19,617241
14 Ukrainian_R2 @ 20,153515
15 Spanish_North_R2 @ 20,316377
16 Polish_S13 @ 22,061753
17 Ukrainian_East_R4 @ 22,951612
18 Greek_R1 @ 22,985856
19 Belarusian_SW_R2 @ 23,121891
20 Russian_South_R3 @ 23,681361
21 Russian_South_West_R7 @ 23,931028
22 Mishar-N_R1 @ 24,652158
23 Tatar_Bashkiria_R3 @ 24,935701
24 Russian_Center @ 25,365119
25 Moksha_R3 @ 25,756724
26 Russian_Meshtchyora_R5 @ 25,999298
27 Erzya_R4 @ 26,287483
28 Mishar-D_R2 @ 26,345222
29 Belarusian_SE_R3 @ 27,196532
30 Tatar_R5 @ 27,229022
31 Russian_Smolensk_R2 @ 27,295459
32 Russian_Vyatka_R2 @ 27,50219
33 Belarusian_N_SR6 @ 27,609447
34 Russian_Perm_R5 @ 27,63955
35 Russian_North_R8 @ 27,715166
36 Russian_Yaroslavl_R2 @ 27,915279
37 Russian_Novgorod_D @ 28,420245
38 Russian_Pskov_R4 @ 29,429264
39 Russian_Ladoga_D @ 30,334152
40 Ashkenazi_R3 @ 31,706353
41 Komi_R2 @ 32,608787
42 Sicilian_R2 @ 33,082101
43 Balt_R3 @ 33,162271
44 Udmurt_R1 @ 34,575003
45 Bashkir_R2 @ 35,492387
46 Chuvash_R4 @ 35,573416
47 Permyak_D @ 36,020941
48 Estonian_S4 @ 38,240132
49 Nogay_D @ 40,850753
50 Mari_R2 @ 42,461956
73 iterations.

Using 2 populations approximation:
1 Carpathian_R1+French_R1 @ 6,054744
2 Croatian_S11+French_R1 @ 6,391096
3 Polish_S13+Spanish_North_R2 @ 6,456889
4 Spanish_North_R2+Ukrainian_East_R4 @ 6,614843
5 Russian_South_R3+Spanish_North_R2 @ 6,616822
6 Spanish_North_R2+Ukrainian_R2 @ 6,771022
7 Croatian_S11+English_R2 @ 6,865048
8 Belarusian_SW_R2+Spanish_North_R2 @ 6,892429
9 French_R1+Slovak_D @ 7,004908
10 Carpathian_R1+English_R2 @ 7,170027
11 Irish_Scottish_R2+Serbian_R1 @ 7,170763
12 Spanish_North_R2+Ukrainian_West_R2 @ 7,259248
13 English_R2+Serbian_R1 @ 7,387507
14 Croatian_S11+Irish_Scottish_R2 @ 7,4417
15 Carpathian_R1+Irish_Scottish_R2 @ 7,622677
16 French_R1+Moldavian_S3 @ 7,632653
17 Russian_South_West_R7+Spanish_North_R2 @ 7,773697
18 Slovak_D+Spanish_North_R2 @ 7,778989
19 Belarusian_N_SR6+Spanish_North_R2 @ 7,894588
20 Carpathian_R1+Spanish_North_R2 @ 7,941827
21 Norwegian_R4+Serbian_R1 @ 7,956592
22 Croatian_S11+German_R3 @ 7,982396
23 Carpathian_R1+German_R3 @ 8,078719
24 Belarusian_SE_R3+Spanish_North_R2 @ 8,099464
25 Russian_Smolensk_R2+Spanish_North_R2 @ 8,245844
26 Russian_Center+Spanish_North_R2 @ 8,251802
27 Bulgarian_S14+Irish_Scottish_R2 @ 8,272268
28 French_R1+Ukrainian_West_R2 @ 8,36893
29 English_R2+Moldavian_S3 @ 8,401614
30 Bulgarian_S14+English_R2 @ 8,432298
31 French_R1+Serbian_R1 @ 8,578391
32 French_R1+Ukrainian_R2 @ 8,606485
33 Russian_Pskov_R4+Spanish_North_R2 @ 8,726065
34 Croatian_S11+Norwegian_R4 @ 8,80707
35 English_R2+Slovak_D @ 8,814
36 Irish_Scottish_R2+Moldavian_S3 @ 8,818372
37 Croatian_S11+Spanish_North_R2 @ 8,907258
38 Bulgarian_S14+Norwegian_R4 @ 8,926388
39 Russian_Meshtchyora_R5+Spanish_North_R2 @ 8,938613
40 German_R3+Slovak_D @ 9,044281
41 German_R3+Serbian_R1 @ 9,32042
42 French_R1+Polish_S13 @ 9,393714
43 Irish_Scottish_R2+Romanian_D @ 9,394696
44 French_R1+Ukrainian_East_R4 @ 9,42151
45 Carpathian_R1+Norwegian_R4 @ 9,424611
46 French_R1+Russian_South_R3 @ 9,516495
47 German_R3+Moldavian_S3 @ 9,529734
48 Russian_Novgorod_D+Spanish_North_R2 @ 9,591825
49 Bulgarian_S14+French_R1 @ 9,593285
50 Russian_Yaroslavl_R2+Spanish_North_R2 @ 9,688088
2701 iterations.

Using 3 populations approximation:
1 50% Carpathian_R1 +25% Irish_Scottish_R2 +25% Spanish_North_R2 @ 5,853684
2 50% Carpathian_R1 +25% English_R2 +25% Spanish_North_R2 @ 5,980913
3 50% French_R1 +25% Carpathian_R1 +25% Croatian_S11 @ 6,152603
4 50% Carpathian_R1 +25% French_R1 +25% Spanish_North_R2 @ 6,248667
5 50% Carpathian_R1 +25% Norwegian_R4 +25% Spanish_North_R2 @ 6,258971
6 50% Spanish_North_R2 +25% Carpathian_R1 +25% Polish_S13 @ 6,343969
7 50% French_R1 +25% Carpathian_R1 +25% Slovak_D @ 6,350808
8 50% Croatian_S11 +25% Irish_Scottish_R2 +25% Spanish_North_R2 @ 6,405917
9 50% Spanish_North_R2 +25% Carpathian_R1 +25% Russian_South_R3 @ 6,424376
10 50% Croatian_S11 +25% English_R2 +25% French_R1 @ 6,425532
11 50% Carpathian_R1 +25% English_R2 +25% French_R1 @ 6,429197
12 50% French_R1 +25% Croatian_S11 +25% Slovak_D @ 6,432719
13 50% Spanish_North_R2 +25% Carpathian_R1 +25% Ukrainian_East_R4 @ 6,452014
14 50% Croatian_S11 +25% Norwegian_R4 +25% Spanish_North_R2 @ 6,455899
15 50% Spanish_North_R2 +25% Belarusian_SW_R2 +25% Carpathian_R1 @ 6,456934
16 50% Spanish_North_R2 +25% Polish_S13 +25% Russian_South_R3 @ 6,457351
17 50% Croatian_S11 +25% English_R2 +25% Spanish_North_R2 @ 6,46254
18 50% Carpathian_R1 +25% French_R1 +25% Irish_Scottish_R2 @ 6,465442
19 50% Spanish_North_R2 +25% Belarusian_N_SR6 +25% Carpathian_R1 @ 6,4656
20 50% Spanish_North_R2 +25% Balt_R3 +25% Croatian_S11 @ 6,47691
21 50% French_R1 +25% Polish_S13 +25% Serbian_R1 @ 6,478122
22 50% Spanish_North_R2 +25% Polish_S13 +25% Ukrainian_East_R4 @ 6,500877
23 50% Spanish_North_R2 +25% Carpathian_R1 +25% Russian_Pskov_R4 @ 6,516396
24 50% Croatian_S11 +25% French_R1 +25% Irish_Scottish_R2 @ 6,521647
25 50% Spanish_North_R2 +25% Polish_S13 +25% Ukrainian_R2 @ 6,537533
26 50% Spanish_North_R2 +25% Balt_R3 +25% Carpathian_R1 @ 6,54563
27 50% Spanish_North_R2 +25% Croatian_S11 +25% Russian_Pskov_R4 @ 6,550996
28 50% Spanish_North_R2 +25% Russian_South_R3 +25% Slovak_D @ 6,562427
29 50% Spanish_North_R2 +25% Belarusian_N_SR6 +25% Croatian_S11 @ 6,577292
30 50% Carpathian_R1 +25% German_R3 +25% Spanish_North_R2 @ 6,582461
31 50% Spanish_North_R2 +25% Croatian_S11 +25% Polish_S13 @ 6,58295
32 50% French_R1 +25% Serbian_R1 +25% Ukrainian_East_R4 @ 6,585298
33 50% Spanish_North_R2 +25% Russian_South_R3 +25% Ukrainian_East_R4 @ 6,600879
34 50% Spanish_North_R2 +25% Russian_South_R3 +25% Ukrainian_R2 @ 6,604387
35 50% Spanish_North_R2 +25% Croatian_S11 +25% Russian_South_R3 @ 6,624864
36 50% Slovak_D +25% French_R1 +25% Spanish_North_R2 @ 6,631009
37 50% Spanish_North_R2 +25% Ukrainian_East_R4 +25% Ukrainian_R2 @ 6,631867
38 50% Spanish_North_R2 +25% Polish_S13 +25% Slovak_D @ 6,634453
39 50% French_R1 +25% Russian_South_R3 +25% Serbian_R1 @ 6,642533
40 50% French_R1 +25% Belarusian_SW_R2 +25% Serbian_R1 @ 6,64281
41 50% Spanish_North_R2 +25% Slovak_D +25% Ukrainian_East_R4 @ 6,658966
42 50% Spanish_North_R2 +25% Belarusian_SW_R2 +25% Polish_S13 @ 6,66222
43 50% Spanish_North_R2 +25% Croatian_S11 +25% Ukrainian_East_R4 @ 6,669392
44 50% Spanish_North_R2 +25% Belarusian_SW_R2 +25% Russian_South_R3 @ 6,681487
45 50% Spanish_North_R2 +25% Belarusian_SW_R2 +25% Croatian_S11 @ 6,681686
46 50% Spanish_North_R2 +25% Polish_S13 +25% Ukrainian_West_R2 @ 6,68937
47 50% English_R2 +25% Carpathian_R1 +25% Serbian_R1 @ 6,690964
48 50% Spanish_North_R2 +25% Belarusian_SE_R3 +25% Carpathian_R1 @ 6,69345
49 50% Spanish_North_R2 +25% Carpathian_R1 +25% Russian_Smolensk_R2 @ 6,714525
50 50% French_R1 +25% Serbian_R1 +25% Ukrainian_R2 @ 6,71883
175897 iterations.

Using 4 populations approximation:
1 Carpathian_R1+Carpathian_R1+Irish_Scottish_R2+Spanish_North_R2 @ 5,853684
2 Carpathian_R1+French_R1+Polish_S13+Spanish_North_R2 @ 5,87026
3 Croatian_S11+French_R1+Polish_S13+Spanish_North_R2 @ 5,87615
4 Croatian_S11+French_R1+Russian_South_R3+Spanish_North_R2 @ 5,927939
5 Croatian_S11+French_R1+Spanish_North_R2+Ukrainian_East_R4 @ 5,940476
6 Carpathian_R1+French_R1+Spanish_North_R2+Ukrainian_East_R4 @ 5,954583
7 Carpathian_R1+French_R1+Russian_South_R3+Spanish_North_R2 @ 5,961908
8 Carpathian_R1+Carpathian_R1+English_R2+Spanish_North_R2 @ 5,980913
9 Belarusian_SW_R2+Croatian_S11+French_R1+Spanish_North_R2 @ 6,050848
10 Carpathian_R1+Carpathian_R1+French_R1+French_R1 @ 6,054744
11 Belarusian_SW_R2+Carpathian_R1+French_R1+Spanish_North_R2 @ 6,056396
12 Carpathian_R1+Croatian_S11+Irish_Scottish_R2+Spanish_North_R2 @ 6,06236
13 Irish_Scottish_R2+Russian_South_R3+Serbian_R1+Spanish_North_R2 @ 6,070482
14 Carpathian_R1+French_R1+Spanish_North_R2+Ukrainian_R2 @ 6,093802
15 Irish_Scottish_R2+Polish_S13+Serbian_R1+Spanish_North_R2 @ 6,103087
16 Irish_Scottish_R2+Serbian_R1+Spanish_North_R2+Ukrainian_East_R4 @ 6,113362
17 Carpathian_R1+Croatian_S11+French_R1+French_R1 @ 6,152603
18 Carpathian_R1+Croatian_S11+English_R2+Spanish_North_R2 @ 6,153811
19 English_R2+Polish_S13+Serbian_R1+Spanish_North_R2 @ 6,155682
20 Croatian_S11+French_R1+Spanish_North_R2+Ukrainian_R2 @ 6,17929
21 French_R1+Polish_S13+Serbian_R1+Spanish_North_R2 @ 6,218975
22 Carpathian_R1+French_R1+Slovak_D+Spanish_North_R2 @ 6,243116
23 Belarusian_SW_R2+Irish_Scottish_R2+Serbian_R1+Spanish_North_R2 @ 6,247883
24 Carpathian_R1+Carpathian_R1+French_R1+Spanish_North_R2 @ 6,248667
25 Carpathian_R1+English_R2+Slovak_D+Spanish_North_R2 @ 6,258522
26 Carpathian_R1+Carpathian_R1+Norwegian_R4+Spanish_North_R2 @ 6,258971
27 English_R2+Serbian_R1+Spanish_North_R2+Ukrainian_East_R4 @ 6,281166
28 Carpathian_R1+Croatian_S11+Norwegian_R4+Spanish_North_R2 @ 6,287144
29 Carpathian_R1+French_R1+Spanish_North_R2+Ukrainian_West_R2 @ 6,293603
30 English_R2+Russian_South_R3+Serbian_R1+Spanish_North_R2 @ 6,304031
31 Belarusian_SW_R2+English_R2+Serbian_R1+Spanish_North_R2 @ 6,31074
32 Belarusian_SW_R2+French_R1+Serbian_R1+Spanish_North_R2 @ 6,329501
33 Croatian_S11+English_R2+Polish_S13+Spanish_North_R2 @ 6,330086
34 Carpathian_R1+Polish_S13+Spanish_North_R2+Spanish_North_R2 @ 6,343969
35 Carpathian_R1+French_R1+French_R1+Slovak_D @ 6,350808
36 Croatian_S11+Irish_Scottish_R2+Russian_South_R3+Spanish_North_R2 @ 6,355434
37 Carpathian_R1+Croatian_S11+English_R2+French_R1 @ 6,357086
38 Croatian_S11+English_R2+Russian_South_R3+Spanish_North_R2 @ 6,358478
39 French_R1+Serbian_R1+Spanish_North_R2+Ukrainian_East_R4 @ 6,36091
40 Croatian_S11+English_R2+Spanish_North_R2+Ukrainian_East_R4 @ 6,372221
41 Belarusian_N_SR6+Croatian_S11+French_R1+Spanish_North_R2 @ 6,37386
42 Carpathian_R1+Irish_Scottish_R2+Slovak_D+Spanish_North_R2 @ 6,376717
43 French_R1+Russian_South_R3+Serbian_R1+Spanish_North_R2 @ 6,385538
44 Croatian_S11+Croatian_S11+French_R1+French_R1 @ 6,391096
45 Irish_Scottish_R2+Serbian_R1+Spanish_North_R2+Ukrainian_R2 @ 6,399346
46 Croatian_S11+Croatian_S11+Irish_Scottish_R2+Spanish_North_R2 @ 6,405917
47 French_R1+Russian_South_R3+Slovak_D+Spanish_North_R2 @ 6,40932
48 Croatian_S11+English_R2+Slovak_D+Spanish_North_R2 @ 6,412462
49 Carpathian_R1+French_R1+Irish_Scottish_R2+Serbian_R1 @ 6,414011
50 Croatian_S11+English_R2+Spanish_North_R2+Ukrainian_R2 @ 6,41568
51 French_R1+Russian_Pskov_R4+Serbian_R1+Spanish_North_R2 @ 6,418236
52 Carpathian_R1+Croatian_S11+French_R1+Irish_Scottish_R2 @ 6,42405
53 Carpathian_R1+Russian_South_R3+Spanish_North_R2+Spanish_North_R2 @ 6,424376
54 Croatian_S11+Croatian_S11+English_R2+French_R1 @ 6,425532
55 Carpathian_R1+Carpathian_R1+English_R2+French_R1 @ 6,429197
56 Croatian_S11+Irish_Scottish_R2+Spanish_North_R2+Ukrainian_East_R4 @ 6,432473
57 Croatian_S11+French_R1+French_R1+Slovak_D @ 6,432719
58 Carpathian_R1+Spanish_North_R2+Spanish_North_R2+Ukrainian_East_R4 @ 6,452014
59 Croatian_S11+Croatian_S11+Norwegian_R4+Spanish_North_R2 @ 6,455899
60 Polish_S13+Polish_S13+Spanish_North_R2+Spanish_North_R2 @ 6,456889
61 Belarusian_SW_R2+Carpathian_R1+Spanish_North_R2+Spanish_North_R2 @ 6,456934
62 Polish_S13+Russian_South_R3+Spanish_North_R2+Spanish_North_R2 @ 6,457351
63 Croatian_S11+French_R1+Spanish_North_R2+Ukrainian_West_R2 @ 6,459569
64 Croatian_S11+Croatian_S11+English_R2+Spanish_North_R2 @ 6,46254
65 Croatian_S11+French_R1+Russian_South_West_R7+Spanish_North_R2 @ 6,463521
66 Carpathian_R1+Carpathian_R1+French_R1+Irish_Scottish_R2 @ 6,465442
67 Belarusian_N_SR6+Carpathian_R1+Spanish_North_R2+Spanish_North_R2 @ 6,4656
68 Balt_R3+French_R1+Serbian_R1+Spanish_North_R2 @ 6,468181
69 Belarusian_N_SR6+French_R1+Serbian_R1+Spanish_North_R2 @ 6,468295
70 Croatian_S11+Irish_Scottish_R2+Spanish_North_R2+Ukrainian_R2 @ 6,471245
71 French_R1+Slovak_D+Spanish_North_R2+Ukrainian_East_R4 @ 6,473993
72 Balt_R3+Croatian_S11+Spanish_North_R2+Spanish_North_R2 @ 6,47691
73 French_R1+French_R1+Polish_S13+Serbian_R1 @ 6,478122
74 French_R1+Polish_S13+Slovak_D+Spanish_North_R2 @ 6,478594
75 Belarusian_N_SR6+Irish_Scottish_R2+Serbian_R1+Spanish_North_R2 @ 6,479992
76 Carpathian_R1+French_R1+Russian_South_West_R7+Spanish_North_R2 @ 6,482879
77 Carpathian_R1+English_R2+Polish_S13+Spanish_North_R2 @ 6,489796
78 Belarusian_N_SR6+Carpathian_R1+French_R1+Spanish_North_R2 @ 6,495338
79 Carpathian_R1+English_R2+Spanish_North_R2+Ukrainian_R2 @ 6,498338
80 Croatian_S11+French_R1+Russian_Smolensk_R2+Spanish_North_R2 @ 6,500527
81 Polish_S13+Spanish_North_R2+Spanish_North_R2+Ukrainian_East_R4 @ 6,500877
82 Croatian_S11+Irish_Scottish_R2+Polish_S13+Spanish_North_R2 @ 6,502046
83 Croatian_S11+French_R1+Russian_Pskov_R4+Spanish_North_R2 @ 6,507321
84 Carpathian_R1+Russian_Pskov_R4+Spanish_North_R2+Spanish_North_R2 @ 6,516396
85 Carpathian_R1+Irish_Scottish_R2+Russian_South_R3+Spanish_North_R2 @ 6,521009
86 Croatian_S11+Croatian_S11+French_R1+Irish_Scottish_R2 @ 6,521647
87 Carpathian_R1+Irish_Scottish_R2+Spanish_North_R2+Ukrainian_R2 @ 6,523492
88 French_R1+Slovak_D+Spanish_North_R2+Ukrainian_R2 @ 6,527693
89 Belarusian_SE_R3+Croatian_S11+French_R1+Spanish_North_R2 @ 6,528206
90 Belarusian_SW_R2+Croatian_S11+English_R2+Spanish_North_R2 @ 6,534499
91 Polish_S13+Spanish_North_R2+Spanish_North_R2+Ukrainian_R2 @ 6,537533
92 Balt_R3+Carpathian_R1+Spanish_North_R2+Spanish_North_R2 @ 6,54563
93 Carpathian_R1+English_R2+Spanish_North_R2+Ukrainian_East_R4 @ 6,54902
94 Croatian_S11+Russian_Pskov_R4+Spanish_North_R2+Spanish_North_R2 @ 6,550996
95 Carpathian_R1+English_R2+Russian_South_R3+Spanish_North_R2 @ 6,553685
96 Croatian_S11+Irish_Scottish_R2+Slovak_D+Spanish_North_R2 @ 6,557561
97 Croatian_S11+French_R1+Slovak_D+Spanish_North_R2 @ 6,560771
98 Russian_South_R3+Slovak_D+Spanish_North_R2+Spanish_North_R2 @ 6,562427
99 English_R2+Serbian_R1+Spanish_North_R2+Ukrainian_R2 @ 6,564062
100 Carpathian_R1+English_R2+French_R1+Serbian_R1 @ 6,567725
921498 iterations.

IBD-пересечения

На этот раз были использованы те же настройки, что и для наших современников (а также LBK и Loschbour), без ослабления фильтра. Ярче всего связь получилась с "балтским" (если можно так выразиться) восточноевропейским пятном, Балканы и Италия тоже проявляют родство, и кроме этого, я обратил внимание на пересечение с адыгейской выборкой.

Код: [Выделить]

Moksha 63,76 ---//Confidence: very low
Balt 59,55 ---//Confidence: high
German-Austrian 57,59 ---//Confidence: very low
Belarusian 56,24 ---//Confidence: high
Estonian 55,79 ---//Confidence: high
Erzya 55,31 ---//Confidence: medium
Russian-South 54,22 ---//Confidence: very high
Russian-West 53,5 ---//Confidence: medium
British 52,68 ---//Confidence: very high
Croatian 52,42 ---//Confidence: very high
Swedish 51,03 ---//Confidence: high
Polish 50,71 ---//Confidence: high
Russian-North 50,55 ---//Confidence: very high
Hungarian 49,91 ---//Confidence: very high
Veps 48,95 ---//Confidence: medium
Romanian 48,61 ---//Confidence: medium
Italian 48,17 ---//Confidence: very high
Bulgarian 47,44 ---//Confidence: high
Ukrainian-East-and-Center 47,33 ---//Confidence: medium
Ukrainian-West-and-Center 46,44 ---//Confidence: medium
Finnish 46,35 ---//Confidence: very low
Adygei 45,4 ---//Confidence: high
Norwegian 45,1 ---//Confidence: high
Komi 44,83 ---//Confidence: high
Karelian 44,3 ---//Confidence: high
Greek 43,49 ---//Confidence: very high
Basque 43,3 ---//Confidence: very high
Chuvash 43,27 ---//Confidence: high
French 42,97 ---//Confidence: very high
Sardinian 40,96 ---//Confidence: very high
Mari 40,74 ---//Confidence: high
Ashkenazi 40,57 ---//Confidence: high
Tatar-Kazan 40 ---//Confidence: high
Sephard 38,02 ---//Confidence: high
Chechen 37,7 ---//Confidence: very high
Ossetian 36,57 ---//Confidence: high
Greek_Azov 36,54 ---//Confidence: low
Turkish 35,89 ---//Confidence: high
Saami 35,61 ---//Confidence: high
Armenian 35,34 ---//Confidence: high
Udmurt 35,22 ---//Confidence: high
Kumyk 35,17 ---//Confidence: high
Tatar-Crimean 34,41 ---//Confidence: low
Abkhazian 34,36 ---//Confidence: very high
Lezgin 33,46 ---//Confidence: very high
Balkarian 33,31 ---//Confidence: very high
Nogay 33,29 ---//Confidence: high
Bashkir 31,44 ---//Confidence: low
Azerbaijani 30,53 ---//Confidence: high
Turkmen 29,73 ---//Confidence: high
Tadjik 29,19 ---//Confidence: high
Georgian 28,19 ---//Confidence: high
Iranian 26,99 ---//Confidence: very high
Tatar_Lithuanian 26,62 ---//Confidence: very low
Mansi 25,91 ---//Confidence: medium
Shor 24,2 ---//Confidence: very low
Kazah 22,79 ---//Confidence: high
Uzbek 19,99 ---//Confidence: high
Kirgiz 18,4 ---//Confidence: very high
Uygur 17,92 ---//Confidence: medium
Hakas 16,1 ---//Confidence: medium
Dolgan 15,2 ---//Confidence: medium
Altaian 15,02 ---//Confidence: high
Ket 14,59 ---//Confidence: very low
Selkup 12,74 ---//Confidence: high
Mongol 12,72 ---//Confidence: medium
Tuvinian 11,57 ---//Confidence: high
Buryat 11,17 ---//Confidence: high
Yakut 9,19 ---//Confidence: very high
Nganassan 7,36 ---//Confidence: medium
Evenk 7,02 ---//Confidence: high
Han-North 5,74 ---//Confidence: medium
Even 5,02 ---//Confidence: medium

[Stanislav S]

Чандракумар закончил обработку одного из двух геномов из этой работы, прочитанных с высоким качеством - BR2. 

Не подскажете его кит на Гедматче?

[Srkz]

Не подскажете его кит на Гедматче?

Информация удобно собрана здесь

Кстати, два самых хороших IBD-сегмента у BR2 с кавказцами:
Chr Start End cM SNPs
Lezgin 2 72'239'692 79'061'185 8,7345 527
Adyghe 3 188'403'035 193'220'928 11,015 479
Нет ли здесь связи с его Y-гаплогруппой J2a?
Количество снипов кажется небольшим, но надо учесть, что это из набора в 244 тысячи сравнительно с ~700 тысяч от FTDNA, то есть на Gedmatch эти сегменты были бы длиной более 1000 снипов.

[Mukovnikov]

Значения снипов уровня N1a для IR1
Y6503+, Y6511+, Y6559+, Y6560+, Y6561+, Y6562+, Y6564+, Y6566+, Y6470+, Y6482+, Y6494+, Y6515+, Y6518+, Y6521+, Y6523+, Y6525+, Y6536+, Y6537+, Y6541+, Y6542+, Y6543+, Y6544+, Y6546+, Y6548+, Y6549+, Y6553+, Y6557+, Y6569+, Y6570+, Y6571+, Y6572+, Y6576+, Y6577+, Y6586+, Y6587+, Y6589+
P189-, Y6466-, Y6498-, Y6504-, Y6505-, Y6508-, Y6509-, Y6512-, Y6565-, Y6468-, Y6471-, Y6473-, Y6476-, Y6478-, Y6481-, Y6486-, Y6488-, Y6514-, Y6522-, Y6528-, Y6533-, Y6539-, Y6540-, Y6550-, Y6551-, Y6556-, Y6558-, Y6573-, Y6580-, Y6581-, Y6583-

то есть IR1 делит субклад N1a на два.

А можно узнать, сколько у IR1 его приватных снипов?