The newly found SNPs of O

[Centurion]

Любопытно, но похоже семпл HG02406 у нас Page23+ и M117-, что немного рушит топологию, которая сейчас для этой ветки.

[sahaliyan]

P101 maybe a wrong SNP,I see no one positive in this SNP
And guys,give up 1000 genomes,too slow to me,as you know,the Fudan university team already gave their interesting study result in a meeting,and their paper will publish in near future,and we can see major changing in O,C,D and Q tree,just wait it.I also think no need to do WTY,geno 2.0 is a better chance,since Fudan university's 4000 new SNPs contain in the geno 2.0.
http://www.ashg.org/2012meeting/abstracts/fulltext/f120120220.htm

[Grigoriev]

paper will publish in near future,and we can see major changing in O,C,D and Q tree,just wait it.

Are there any news about date when we see the paper?

[Grigoriev]

Роман, спасибо за SNP!

[asan-kaygy]

Результаты WTY и двух Гено 2 (дубли убрал, оставил только снипы характерные для субклада, 2 снипа оставил в двух образцах, видимо М134 и F299 на одном уровне стоят)
237553 Ashim М134
M134+, F444+(?), F299+, F46+, L1359+, L1360+, L1361+, L1362+, CTS7498+, CTS11459+, F14+, F44+

199578 Zheng M117
CTS11109+, CTS11580+, CTS11742+, CTS11856+, CTS12099+, CTS12173+, CTS1275+, CTS12876+, CTS2338+, CTS2861+, CTS3251+, CTS3255+, CTS4111+, CTS4723+, CTS5128+, CTS5866+, CTS6623+, CTS8236+, CTS899+, F103+, F130+, F131+, F139+, F141+, F144+, F146+, F148+, F149+, F151+, F204+, F235+, F246+, F257+, F267+, F299+, F342+, F348+, F363+, F3710+, F373+, F417+, F42+, F422+, F427+, F432+, F438+, F450+, F476+, F484+, F515+, F522+, F525+, F579+, F581+, F584+, F613+, F615+, F649+, F688+, F697+, F76+, F8+, F80+, M133+, M134+, P164+, P201+, PAGES00023+,

N77456 Mui IMS-JST002611+
CTS11839+, CTS11981+, CTS12173+, CTS1558+, CTS2483+, CTS3663+, CTS4414+, CTS5687+, CTS5822+, CTS5879+, CTS7638+, CTS7789+, F105+, F108+, F1095+, F110+, F117+, F119+, F1249+, F1250+, F133+, F145+, F159+, F164+, F17+, F170+, F18+, F188+, F189+, F197+, F2270+, F240+, F2427+, F243+, F247+, F253+, F272+, F2732+, F30+, F300+, F302+, F304+, F305+, F309+, F357+, F377+, F412+, F434+, F460+, F463+, F498+, F51+, F514+, F526+, F529+, F530+, F550+, F562+, F573+, F58+, F60+, F601+, F61+, F620+, F632+, F642+, F646+, F664+, F672+, F676+, F68+, F685+, F691+, F856+, F95+, F99+, IMS-JST002611+, L127+, L465+, L467+, M175+, PF4341+

[asan-kaygy]

Странно, что M175+ не отмечен у 199578

[sahaliyan]

Результаты WTY и двух Гено 2 (дубли убрал, оставил только снипы характерные для субклада, 2 снипа оставил в двух образцах, видимо М134 и F299 на одном уровне стоят)
237553 Ashim М134
M134+, F444+(?), F299+, F46+, L1359+, L1360+, L1361+, L1362+, CTS7498+, CTS11459+, F14+, F44+

199578 Zheng M117
CTS11109+, CTS11580+, CTS11742+, CTS11856+, CTS12099+, CTS12173+, CTS1275+, CTS12876+, CTS2338+, CTS2861+, CTS3251+, CTS3255+, CTS4111+, CTS4723+, CTS5128+, CTS5866+, CTS6623+, CTS8236+, CTS899+, F103+, F130+, F131+, F139+, F141+, F144+, F146+, F148+, F149+, F151+, F204+, F235+, F246+, F257+, F267+, F299+, F342+, F348+, F363+, F3710+, F373+, F417+, F42+, F422+, F427+, F432+, F438+, F450+, F476+, F484+, F515+, F522+, F525+, F579+, F581+, F584+, F613+, F615+, F649+, F688+, F697+, F76+, F8+, F80+, M133+, M134+, P164+, P201+, PAGES00023+,

N77456 Mui IMS-JST002611+
CTS11839+, CTS11981+, CTS12173+, CTS1558+, CTS2483+, CTS3663+, CTS4414+, CTS5687+, CTS5822+, CTS5879+, CTS7638+, CTS7789+, F105+, F108+, F1095+, F110+, F117+, F119+, F1249+, F1250+, F133+, F145+, F159+, F164+, F17+, F170+, F18+, F188+, F189+, F197+, F2270+, F240+, F2427+, F243+, F247+, F253+, F272+, F2732+, F30+, F300+, F302+, F304+, F305+, F309+, F357+, F377+, F412+, F434+, F460+, F463+, F498+, F51+, F514+, F526+, F529+, F530+, F550+, F562+, F573+, F58+, F60+, F601+, F61+, F620+, F632+, F642+, F646+, F664+, F672+, F676+, F68+, F685+, F691+, F856+, F95+, F99+, IMS-JST002611+, L127+, L465+, L467+, M175+, PF4341+

F299 is equal with P164,upstream of M134,dwnstream of P201

[sahaliyan]

Странно, что M175+ не отмечен у 199578

Maybe no call of this SNP

[asan-kaygy]

Do they plan to publish the details of F-class SNP

[sahaliyan]

Do they plan to publish the details of F-class SNP

Yes,but I don't know how soon

[asan-kaygy]

Thank you.

[asan-kaygy]

N57632   Gan   O   O-M175   CTS1034+, CTS10362+, CTS10436+, CTS10713+, CTS10736+, CTS10738+, CTS10753+, CTS109+, CTS11085+, CTS11109+, CTS11358+, CTS11454+, CTS11575+, CTS11580+, CTS11726+, CTS11742+, CTS11844+, CTS11856+, CTS12099+, CTS12173+, CTS125+, CTS12632+, CTS1275+, CTS12876+, CTS1996+, CTS2080+, CTS2223+, CTS230+, CTS2338+, CTS2340+, CTS2447+, CTS2861+, CTS295+, CTS3234+, CTS3251+, CTS3255+, CTS3331+, CTS335+, CTS3431+, CTS3536+, CTS3647+, CTS3654+, CTS3662+, CTS3763+, CTS3771+, CTS3868+, CTS3914+, CTS3996+, CTS4111+, CTS4276+, CTS4364+, CTS4368+, CTS4443+, CTS4623+, CTS4714+, CTS4723+, CTS4740+, CTS477+, CTS5128+, CTS5318+, CTS5457+, CTS5458+, CTS5473+, CTS5532+, CTS5580+, CTS5858+, CTS5866+, CTS6010+, CTS6135+, CTS6353+, CTS6383+, CTS6384+, CTS6623+, CTS6800+, CTS6891+, CTS6900+, CTS6907+, CTS7453+, CTS7492+, CTS7859+, CTS7922+, CTS7933+, CTS7942+, CTS7951+, CTS8133+, CTS8153+, CTS8178+, CTS8236+, CTS8243+, CTS8244+, CTS8399+, CTS8746+, CTS8980+, CTS899+, CTS9096+, CTS947+, CTS9512+, CTS9548+, CTS9828+, F103+, F1046+, F113+, F1173+, F1209+, F1221+, F129+, F130+, F1300+, F1302+, F131+, F1327+, F1329+, F1369+, F139+, F141+, F144+, F146+, F148+, F149+, F151+, F156+, F166+, F1704+, F1707+, F171+, F1714+, F175+, F1753+, F1754+, F176+, F1767+, F182+, F1831+, F1833+, F1842+, F1870+, F1882+, F2000+, F204+, F2048+, F2075+, F2137+, F2142+, F2150+, F2155+, F2177+, F2223+, F235+, F2402+, F246+, F2494+, F2503+, F2546+, F257+, F2587+, F2631+, F267+, F2688+, F27+, F2710+, F282+, F2837+, F2845+, F287+, F2887+, F2932+, F2985+, F299+, F2993+, F3035+, F3039+, F306+, F3111+, F3136+, F317+, F3187+, F3225+, F3335+, F3394+, F3397+, F341+, F342+, F3455+, F348+, F355+, F3556+, F3566+, F36+, F363+, F3692+, F3710+, F373+, F375+, F380+, F3948+, F3965+, F400+, F406+, F4131+, F415+, F417+, F42+, F422+, F427+, F4277+, F432+, F433+, F450+, F468+, F471+, F476+, F478+, F484+, F494+, F515+, F522+, F525+, F53+, F537+, F540+, F546+, F549+, F572+, F579+, F581+, F584+, F600+, F613+, F614+, F615+, F633+, F649+, F650+, F658+, F668+, F688+, F697+, F71+, F719+, F76+, F8+, F80+, F830+, F842+, F869+, F889+, F910+, F942+, F943+, F969+, L101+, L132+, L15+, L16+, L350+, L366+, L468+, L470+, L477+, L493+, L498+, L515+, L516+, L517+, L552+, L566+, L594+, L781+, M122+, M133+, M134+, M139+, M168+, M214+, M235+, M263+, M294+, M42+, M526+, M89+, M94+, P128+, P131+, P132+, P136+, P138+, P14+, P141+, P145+, P146+, P148+, P151+, P158+, P159+, P160+, P164+, P166+, P186+, P187+, P188+, P191+, P192+, P193+, P194+, P195+, P196+, P197+, P198+, P199+, P200+, P201+, PAGES00023+, PF1016+, PF1029+, PF1031+, PF1040+, PF1046+, PF1061+, PF1092+, PF1097+, PF110+, PF1203+, PF1269+, PF1276+, PF15+, PF192+, PF210+, PF212+, PF223+, PF234+, PF258+, PF2591+, PF2593+, PF2599+, PF2600+, PF2608+, PF2611+, PF2615+, PF2624+, PF263+, PF2631+, PF2643+, PF272+, PF2745+, PF2747+, PF2748+, PF2749+, PF2770+, PF278+, PF292+, PF316+, PF325+, PF342+, PF4208+, PF4330+, PF500+, PF5061+, PF601+, PF667+, PF6868+, PF719+, PF720+, PF725+, PF7392+, PF779+, PF796+, PF803+, PF815+, PF821+, PF840+, PF844+, PF892+, PF937+, PF951+, PF954+, PF970+, V186+, V189+, V205+, V52+, V9+, Z148+, Z191+, Z365+